(Work in progress) Welcome to a Simple Neuron Tracer NeuronJ plugin for Fiji

Shorten the amount of time needed to hand trace an image of a sensory neuron. This program takes in a sensory neuron image, and will attempt to trace and gather statistics on the image. A NDF file will be returned that can be uploaded to the NeuronJ plugin for Fiji to continue where the program left off. Other JPEG images will also be returned to help visual the results from the tracing.

  1. 1
    For best results, fill in the eye with a pink color. Otherwise, the program will try and automatically detect and trace the eye, but if it's not dark enough results may vary.
  2. 2
    Click the Choose File button and upload a sensory neuron image. See below for examples.
  3. 3
    Click the Trace Image button to start trying the uploaded image.
  4. 4
    See the Preview image to preview the results from the tracing.
  5. 5
    Click the Download Traced Images button to download traced images and the NDF file.

Upload Your Image Here






Here's an example of a high constrast image that needs to have the cell filled in with pink, as the cell is the same shade as the branches.